C4RR Agenda

This is only a draft of the agenda.

Check the list of talks, lightning talks and demos.

Tuesday 27 June 2017 - Day 1

  • 10:00-10:40: Registration and Coffee
  • 10:40-10:50: Welcome

  • 10:50-11:10: Docker Containers for Deep Learning Experiments - Paul K. Gerke, Diagnostic Image Analysis Group, Radboudumc Nijmegen

  • 11:10-11:30: Reproducible high energy physics analyses - Diego Rodríguez Rodríguez, CERN

  • 11:30-11:50: HPC infrastructure for high energy density physics research - Arturas Venskus, First Light Fusion Limited, Richard King, First Light Fusion Limited

  • 12:10-12:30: Singularity Containers for Reproducible Research - Michael Bauer, University of Michigan / Lawrence Berkeley National Lab

  • 12:30-13:30: Lunch

  • 13:30-14:20: Sponsored Keynote Session

  • 14:20-14:40: Containers at the Dutch National e-Infrastructure - Jeroen Schot, SURFsara

  • 14:40-15:00: Coffee

  • 15:00-15:20: Using Docker to add flexible container support to CyVerse UK - Alice Minotto, Earlham Institute, E. Van Den Bergh, EMBL-EBI, A. Eckes, Earlham Institute, R. P. Davey, Earlham Institute

  • 15:20-15:40: Beyond the container - configuration management of high throughput workflows in a production environment - Nick James, Eagle Genomics

  • 15:40-16:00: Reproducibility of Scientific Workflow in the Cloud using Container Virtualization - Rawaa Qasha, Newcastle University

  • 16:00-16:20: Virtual Container Clusters: building reproducible cluster software environments - Josh Higgins, University of Huddersfield

  • 16:20-16:40: Deploying many diverse services as a single system using Containers - Stefan Idriceanu, The University of Manchester

  • 16:40-17:00 Using Docker on a Cloud Compute Platform - Chris Richardson, University of Cambridge

  • 17:00-17:10: Wrap up
     

Wednesday 28 June 2017 - Day 2

  • 09:00-12:00: Demos

  • 12:00-13:00: Lunch

  • 13:00-13:20: Compute Integration Specialist - David Perry, The University of Melbourne

  • 13:20-13:40: A DevOps Approach to Research - Sebastian Pölsterl, Institute of Cancer Research

  • 13:40-14:00: oswitch: Docker based “virtual environments” for flexible and reproducible Bioinformatics analyses - Anurag Priyam, Queen Mary University of London

  • 14:00-14:20: Reproducible Analysis for Government - Matthew Upson, Government Digital Service

  • 14:20-14:40 Using Docker and Knitr to create reproducible and extensible publications - David Mawdsley, University of Manchester, Robert Haines, University of Manchester, Caroline Jay, University of Manchester

  • 14:40-15:00: Coffee

  • 15:00-15:20: Lightning talk (can be expanded)

  • 15:20-15:40: Software “Best Before” Dates: posing questions about containers and digital preservation - James Mooney, The Bodleian Libraries, Oxford & Cambridge University Library, David Gerrard, The Bodleian Libraries, Oxford & Cambridge University Library

  • 15:40-16:00: Creating executable research compendia to improve reproducibility in the geosciences - Daniel Nüst, Institute for Geoinformatics, University of Münster

  • 16:00-16:10: Closing Session