By Yo Yehudi, Mateusz Kuzak, and Emmy Tsang. Research software engineers are evaluated like other researchers, largely based on the numbers of publications and citations. However, metrics based on the number of publications encourage re-creating ‘new’ things or re-implementations instead of reuse, and there are huge variations in existing practices to cite software, meaning software isn't always cited or citations aren’t always captured.
September 4 and 5 marked the second instance of the eLife Innovation Sprint, a collaborative event where 60 researchers, developers, designers, technologists, publishers and others gather to develop open-source prototypes for open science and research communication.
By Mike Jackson, Software Architect and Kostas Kavoussanakis, Group Manager, EPCC, The University of Edinburgh; Edward Wallace, Sir Henry Dale Fellow, School of Biological Sciences, The University of Edinburgh A multi-disciplinary team of biologists, bioinformaticians and research software engineers based at EPCC and The Wallace Lab at University of Edinburgh, The Shah Lab at Rutgers University and The Lareau Lab at University of California, Berkeley will enhance and extend a software suite, called RiboViz to extract biological insight from "ribosome profiling" data and drive forward…
By Jonathon Love, Jamovi. Jamovi is a user-friendly, statistical spreadsheet, built on top of R, with a mission to not just provide free easy-to-use statistical software, but to decentralise the publishing of statistical methods as much as possible. Most of us are familiar with the success of R, CRAN, and the R community. CRAN is a repository of thousands of different statistical methods published by as diverse a group of researchers as anyone can imagine. However, when we consider graphical software – that is, user-friendly software with a user-interface – these usually have a strong…
By Alexander Morley, Software Sustainability Institute Fellow This post was first published in Alex Morley's blog. Note: A couple weeks ago I went on a week long residency learning about human- or user-centred design. I learnt a lot, but am obviously not an expert. Thus the aim of this post is to share what I learned and my opinion about why a wider consideration of these techniques could be a good thing, rather than tell you how to run your project.
The late round of abstract submission to BOSC2019 is open now. BOSC welcomes submissions about all aspects of open source bioinformatics, open science and open data. The Bioinformatics Open Source Conference promotes and facilitates the open source development of bioinformatics tools and open science. BOSC 2019 will be part of ISMB/ECCB in Basel. The deadline for submissions is Thursday, May 15, at 23:59 UTC-12.
By Becky Arnold, University of Sheffield. On the 28th of November, Yo Yehudi of the Software Sustainability Institute and the University of Cambridge gave a half day workshop for researchers on how to contribute to open source software at the University of Sheffield.
By Becky Arnold, University of Sheffield. From the 3rd to the 7th of September the Wonders of Star Formation conference took place at the John McIntyre Conference Centre in Edinburgh.
By Mike Jackson, Software Architect, The Software Sustainability Institute. PickCells is an image analysis platform developed by the Centre for Regenerative Medicine (CRM) at The University of Edinburgh.
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By Yo Yehudi, University of Cambridge. GCCBOSC this year was a combination of two open source bioinformatics conferences: GCC, the Galaxy Community Conference, and BOSC, the Bioinformatics Open Source Conference. Galaxy is a highly-successful bioinformatics workflow management tool, and BOSC is run by the Open Bioinformatics Foundation (OBF), an organisation dedicated to open-source biology and bioinformatics related software.